A. N Bondar, S Suhai, J. C Smith, and P. T Frangopol (2007)
Computer Simulations of Local Anesthetic Mechanisms: Quantum Chemical Investigation of Procaine.
Romanian Reports in Physics, 59(2):289-299.
A description at the atomic level of detail of the interaction between local anesthetics, lipid membranes and membrane proteins, is essential for understanding the mechanism of local anesthesia. The importance of performing computer simulations to decipher the mechanism of local anesthesia is discussed here in the context of the current status of understanding of the local anesthetics action. As a first step towards accurate simulations of the interaction between local anesthetics, proteins, lipid and water molecules, here we use quantum mechanical methods to assess the charge distribution and structural properties of procaine in the presence and in the absence of water molecules. The calculations indicate that, in the absence of hydrogen-bonding water molecules, protonated procaine strongly prefers a compact structure enabled by intramolecular hydrogen bonding. In the presence of water molecules the torsional energy profile of procaine is modified, and hydrogenbonding to water molecules is favoured relative to intra-molecular hydrogen bonding.

