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2008

This folder holds the following references to publications, sorted by year and author.

There are 13 references in this bibliography folder.

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Becker V, Sengupta D, Ketteler R, Ullmann MG, Smith JC, and Klingmüller U (2008).
Packing Density of the Erythropoietin Receptor Transmembrane Domain Correlates with Amplification of Biological Responses.
Biochemistry, 47(45):11771–11782.

Bondar AN, Baudry J, Suhai S, Fischer S, and Smith JC (2008).
Key Role of Active-Site Water Molecules in Bacteriorhodopsin Proton-Transfer Reactions.
Journal of Physical Chemistry B, 112(47):14729–14741.

Krishnan M, Kurkal-Siebert V, and Smith JC (2008).
Methyl Group Dynamics and the Onset of Anharmonicity in Myoglobin.
Journal of Physical Chemistry B, 112(17):5522-5533.

Kurkal-Siebert V, Agarwal R, and Smith JC (2008).
Hydration-Dependent Dynamical Transition in Protein: Protein Interactions at Approximately 240 K.
Physical Review Letters, 100(13):138102.

McLain SE, Soper AK, Daidone I, Smith JC, and Watts A (2008).
Charge-Based Interactions between Peptides Observed as the Dominant Force for Association in Aqueous Solution.
Angewandte Chemie International Edition, 120(47):9199–9202.

Meinhold L, Clement D, Tehei M, Daniel R, Finney JL, and Smith JC (2008).
Protein Dynamics and Stability: The Distribution of Atomic Fluctuations in Thermophilic and Mesophilic Dihydrofolate Reductase Derived Using Elastic Incoherent Neutron Scattering.
Biophysical Journal, 94(12):4812–4818.

Moritsugu K, and Smith JC (2008).
REACH Coarse-Grained Biomolecular Simulation: Transferability between Different Protein Structural Classes.
Biophysical Journal, 95(4):1639–1648.

Neusius T, Daidone I, Sokolov IM, and Smith JC (2008).
Subdiffusion in Peptides Originates from the Fractal-Like Structure of Configuration Space.
Physical Review Letters, 100(18):188103.

Noé F, Daidone I, Smith JC, di Nola A, and Amadei A (2008).
Solvent Electrostriction-Driven Peptide Folding Revealed by Quasi-Gaussian Entropy Theory and Molecular Dynamics Simulation.
Journal of Physical Chemistry B, 112(35):11155-11163.

Nutt DR, and Smith JC (2008).
Dual Function of the Hydration Layer around an Antifreeze Protein Revealed by Atomistic Molecular Dynamics Simulations.
Journal of the American Chemical Society, 130(39):13066-13073.

Petridis L, and Smith JC (2008).
Cellulosic Ethanol: Progress towards a Simulation Model of Lignocellulosic Biomass.
Journal of Physics: Conference Series, 125(1):012055.

Sengupta D, Smith JC, and Ullmann GM (2008).
Partitioning of Amino-Acid Analogues in a Five-Slab Membrane Model.
Biochimica et Biophysica Acta, 1778(10):2234–2243.

Voltz K, Trylska J, Tozzini V, Kurkal-Siebert V, Langowski J, and Smith JC (2008).
Coarse-Grained Force Field for the Nucleosome from Self-Consistent Multiscaling.
Journal of Computational Chemistry, 29(9):1429-1439.

 
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